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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23293.1PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afu:AF0427 ferredoxin (fdx-4). (62 aa)    
Predicted Functional Partners:
AEH23292.1
KEGG: tye:THEYE_A0001 cobyrinic acid a,c-diamide synthase; TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase.
  
    0.784
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.646
AEH22754.1
KEGG: dak:DaAHT2_1673 heat repeat-containing PBS lyase.
 
    0.630
AEH23289.1
KEGG: tye:THEYE_A0007 cytochrome c family protein.
 
     0.602
AEH23288.1
DsrK protein; KEGG: tye:THEYE_A0006 DsrK protein.
 
    0.596
AEH23291.1
PFAM: Polysulphide reductase, NrfD; KEGG: sfu:Sfum_1150 polysulfide reductase, NrfD.
       0.585
AEH23287.1
PFAM: Nitrate reductase, gamma subunit; KEGG: tye:THEYE_A0005 DsrM protein.
 
     0.572
AEH23286.1
KEGG: dal:Dalk_0604 hypothetical protein.
 
     0.553
AEH22703.1
KEGG: dsa:Desal_3394 hypothetical protein.
  
     0.537
AEH23290.1
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: mta:Moth_1604 4Fe-4S ferredoxin, iron-sulfur binding.
  
    0.531
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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