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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23346.1KEGG: afu:AF2332 flavodoxin, putative. (141 aa)    
Predicted Functional Partners:
AEH23347.1
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
    0.740
AEH23345.1
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: mpd:MCP_1034 ferredoxin.
       0.550
AEH23348.1
PFAM: PhoH-like protein; KEGG: sfu:Sfum_2163 PhoH family protein.
       0.483
AEH23349.1
PFAM: Protein of unknown function YGGT; KEGG: din:Selin_0144 hypothetical protein.
       0.483
AEH23350.1
UPF0235 protein yggU; KEGG: swo:Swol_0959 hypothetical protein; HAMAP: Protein of unknown function DUF167; PFAM: Protein of unknown function DUF167; Belongs to the UPF0235 family.
       0.483
AEH23351.1
RNA methylase, NOL1/NOP2/sun family; KEGG: ton:TON_0716 tRNA/rRNA cytosine-C5-methylase; TIGRFAM: Nop2p; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.483
AEH23355.1
KEGG: dak:DaAHT2_0462 hypothetical protein.
   
   0.431
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
      
 0.410
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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