STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23387.1KEGG: pca:Pcar_3121 hypothetical protein. (555 aa)    
Predicted Functional Partners:
AEH23609.1
KEGG: sfu:Sfum_3774 membrane protein-like.
  
     0.774
AEH22134.1
PFAM: Permease YjgP/YjgQ, predicted; KEGG: nis:NIS_0386 hypothetical protein.
  
     0.770
AEH23079.1
KEGG: sfu:Sfum_0165 hypothetical protein.
  
     0.768
AEH23512.1
KEGG: dbr:Deba_1413 hypothetical protein.
  
     0.766
AEH23137.1
PFAM: DNA polymerase III, delta; KEGG: ssp:SSP1171 DNA polymerase III subunit delta.
  
     0.764
AEH23295.1
KEGG: gem:GM21_1506 hypothetical protein.
  
     0.756
AEH23700.1
KEGG: hth:HTH_0612 hypothetical protein.
  
     0.756
AEH22347.1
KEGG: dak:DaAHT2_2214 hypothetical protein.
  
     0.751
AEH22616.1
PFAM: Glycosyl transferase, family 39; KEGG: dte:Dester_0129 glycosyl transferase family 39.
  
     0.751
AEH23362.1
KEGG: mtp:Mthe_0283 hypothetical protein.
  
     0.749
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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