STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23430.1PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: sat:SYN_00192 TPR repeat-containing protein. (528 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.851
AEH23429.1
Putative RNA polymerase, sigma 70 family subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.823
AEH23431.1
Hypothetical protein.
       0.781
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
       0.770
AEH23427.1
Queuosine biosynthesis protein QueD; KEGG: ddf:DEFDS_1007 6-pyruvoyl-tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase-related.
       0.748
AEH22755.1
KEGG: dps:DP1095 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
 
 
 0.677
AEH22509.1
Hypothetical protein; KEGG: dbr:Deba_2428 tol-pal system protein YbgF.
 
  
 0.638
AEH23062.1
KEGG: dat:HRM2_46500 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
 
 
 0.568
AEH22354.1
TIGRFAM: Diguanylate cyclase, predicted; Haemerythrin-like, metal-binding; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: pmx:PERMA_0255 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted.
  
 
 0.566
AEH22539.1
PFAM: Organic solvent tolerance protein; KEGG: dps:DP3010 organic solvent tolerance protein (OstA).
 
  
 0.562
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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