STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23453.1PFAM: Radical SAM; KEGG: mtp:Mthe_1490 radical SAM domain-containing protein. (364 aa)    
Predicted Functional Partners:
AEH23451.1
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dak:DaAHT2_2325 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.773
AEH23452.1
KEGG: ddf:DEFDS_1569 hypothetical protein.
       0.773
AEH22837.1
TIGRFAM: AMMECR1; HAMAP: AMMECR1-domain protein; KEGG: sta:STHERM_c03350 hypothetical protein; PFAM: AMMECR1.
 
     0.707
AEH23172.1
PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related; KEGG: dth:DICTH_1399 hypothetical protein; Belongs to the MEMO1 family.
 
     0.626
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
       0.495
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
    0.484
dacA
Conserved hypothetical protein CHP00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
  
    0.479
AEH23448.1
YbbR family protein; PFAM: YbbR-like; KEGG: tye:THEYE_A0045 hypothetical protein.
       0.479
AEH23446.1
TIGRFAM: Dihydropteroate synthase; KEGG: tam:Theam_0893 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS.
       0.470
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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