STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23454.1PFAM: Heat shock protein DnaJ, N-terminal. (298 aa)    
Predicted Functional Partners:
AEH23456.1
TIGRFAM: Sugar fermentation stimulation protein; PFAM: Protein of unknown function DUF123; Sugar fermentation stimulation protein; KEGG: hmo:HM1_3020 sugar fermentation stimulation protein; SMART: Excinuclease ABC, C subunit, N-terminal; Belongs to the SfsA family.
       0.806
AEH23455.1
PFAM: Nucleoside phosphorylase; KEGG: sfu:Sfum_1429 purine phosphorylases family protein 1.
       0.805
AEH23457.1
PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: cts:Ctha_0159 tRNA/rRNA methyltransferase SpoU.
       0.557
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
       0.443
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.