STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23515.1KEGG: cts:Ctha_1942 phage SPO1 DNA polymerase-like protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like. (226 aa)    
Predicted Functional Partners:
AEH23376.1
KEGG: sto:ST2238 DNA-directed DNA polymerase; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like.
  
  
 
0.914
AEH23516.1
Protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; KEGG: tye:THEYE_A0592 membrane-bound serine protease.
       0.784
AEH23517.1
Hypothetical protein.
       0.773
AEH23514.1
TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; KEGG: sfu:Sfum_3896 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate/isopropylmalate dehydrogenase.
       0.545
leuS
TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: tye:THEYE_A1204 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.523
AEH23512.1
KEGG: dbr:Deba_1413 hypothetical protein.
       0.480
AEH22359.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
   0.428
AEH22165.1
Universal protein YeaZ; KEGG: cpf:CPF_2423 glycoprotease family protein; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease.
  
    0.424
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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