Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH23651.1KEGG: dpr:Despr_0576 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number. (878 aa)    
Predicted Functional Partners:
AEH22236.1
TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: dak:DaAHT2_1639 outer membrane assembly lipoprotein YfiO.
 
 
 0.959
AEH23653.1
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: tye:THEYE_A1232 ABC transporter, permease protein.
 
   
 0.924
AEH22516.1
PFAM: Outer membrane chaperone Skp (OmpH); KEGG: tye:THEYE_A0093 outer membrane protein, putative.
 
  
 0.888
AEH22164.1
TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: tye:THEYE_A0225 membrane-associated zinc metalloprotease, putative; SMART: PDZ/DHR/GLGF.
  
  
 0.828
pal
PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: tye:THEYE_A2098 peptidoglycan-associated lipoprotein; Belongs to the Pal lipoprotein family.
  
 
 0.814
lolD
Phosphonate-transporting ATPase; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
     
 0.799
lysS
PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: dvl:Dvul_0888 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.792
AEH22407.1
PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: hth:HTH_1772 long-chain fatty acid transport protein.
    
 
 0.784
AEH23343.1
PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: mei:Msip34_1172 aromatic hydrocarbon degradation membrane protein.
    
 
 0.784
AEH23512.1
KEGG: dbr:Deba_1413 hypothetical protein.
  
 
 
 0.780
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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