Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psmb13aProteasome subunit beta. (281 aa)    
Predicted Functional Partners:
psmb4
Proteasome subunit beta; Belongs to the peptidase T1B family.
   
 0.986
psma5
Proteasome subunit alpha type.
   
 0.979
psma4
Proteasome subunit alpha type.
   
 0.971
psmb1
Proteasome subunit beta.
   
 0.969
psma3
Proteasome subunit alpha type.
   
 0.969
psma1
Proteasome subunit alpha type.
   
 0.964
psmb10
Proteasome subunit beta.
  
  
0.957
psmb7
Proteasome subunit beta.
  
  
0.957
psmb2
Proteasome subunit beta.
   
0.951
psma6l
Proteasome subunit alpha type.
   
 0.951
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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