STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stk38bSerine/threonine kinase 38b; Belongs to the protein kinase superfamily. (468 aa)    
Predicted Functional Partners:
rock2b-2
Rho-associated, coiled-coil-containing protein kinase 2b.
 
  
   0.849
dcaf5
Ddb1 and cul4-associated factor 5.
 
    
 0.719
rbm24a
RNA-binding protein 24; Multifunctional RNA-binding protein involved in the regulation of pre-mRNA splicing, mRNA stability and mRNA translation important for cell fate decision and differentiation. Plays a major role in pre-mRNA alternative splicing regulation. Mediates preferentially muscle-specific exon inclusion in numerous mRNAs important for striated cardiac and skeletal muscle cell differentiation. Binds to intronic splicing enhancer (ISE) composed of stretches of GU-rich motifs localized in flanking intron of exon that will be included by alternative splicing. Involved in embry [...]
      
 0.705
LOC799520
Si:dkey-266m15.5.
   
 
 0.680
mob1bb
Chromosome 2 open reading frame 6.
   
 
 0.680
mob1a
MOB kinase activator 1A.
   
 
 0.680
ubtfl
Upstream-binding transcription factor,-like.
    
 
 0.673
bag3
BCL2-associated athanogene 3.
    
 
 0.647
rbm12
RNA-binding motif protein 12.
      
 0.644
fryb
Furry homolog b (Drosophila).
    
 
 0.641
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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