Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
faap100 | nsfl1c | ENSDARP00000127337 | ENSDARP00000155350 | Si:dkey-57h18.1. | NSFL1 (p97) cofactor (p47). | 0.713 |
faap100 | plaa | ENSDARP00000127337 | ENSDARP00000062703 | Si:dkey-57h18.1. | Phospholipase A2-activating protein. | 0.935 |
faap100 | rps27a | ENSDARP00000127337 | ENSDARP00000128775 | Si:dkey-57h18.1. | Ribosomal protein S27a. | 0.934 |
faap100 | ube4a | ENSDARP00000127337 | ENSDARP00000059375 | Si:dkey-57h18.1. | Ubiquitination factor E4A (UFD2 homolog, yeast). | 0.821 |
faap100 | ube4b | ENSDARP00000127337 | ENSDARP00000053803 | Si:dkey-57h18.1. | Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae). | 0.821 |
faap100 | ubxn6 | ENSDARP00000127337 | ENSDARP00000010246 | Si:dkey-57h18.1. | UBX domain protein 6. | 0.670 |
faap100 | ufd1l | ENSDARP00000127337 | ENSDARP00000035108 | Si:dkey-57h18.1. | Ubiquitin recognition factor in ER-associated degradation 1. | 0.942 |
faap100 | vcp | ENSDARP00000127337 | ENSDARP00000012048 | Si:dkey-57h18.1. | Transitional endoplasmic reticulum ATPase; Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. Also involved in DNA damage response: recruited to double-strand [...] | 0.730 |
faap100 | yod1 | ENSDARP00000127337 | ENSDARP00000003565 | Si:dkey-57h18.1. | Ubiquitin thioesterase OTU1; Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of 'Lys-27'-, 'Lys-29'- and 'Lys-33'-linked polyubiquitin chains. A [...] | 0.911 |
nploc4 | nsfl1c | ENSDARP00000133068 | ENSDARP00000155350 | Nuclear protein localization 4 homolog (S. cerevisiae). | NSFL1 (p97) cofactor (p47). | 0.886 |
nploc4 | plaa | ENSDARP00000133068 | ENSDARP00000062703 | Nuclear protein localization 4 homolog (S. cerevisiae). | Phospholipase A2-activating protein. | 0.943 |
nploc4 | rps27a | ENSDARP00000133068 | ENSDARP00000128775 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ribosomal protein S27a. | 0.934 |
nploc4 | ube4a | ENSDARP00000133068 | ENSDARP00000059375 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ubiquitination factor E4A (UFD2 homolog, yeast). | 0.825 |
nploc4 | ube4b | ENSDARP00000133068 | ENSDARP00000053803 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae). | 0.853 |
nploc4 | ubxn6 | ENSDARP00000133068 | ENSDARP00000010246 | Nuclear protein localization 4 homolog (S. cerevisiae). | UBX domain protein 6. | 0.820 |
nploc4 | ufd1l | ENSDARP00000133068 | ENSDARP00000035108 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ubiquitin recognition factor in ER-associated degradation 1. | 0.998 |
nploc4 | vcp | ENSDARP00000133068 | ENSDARP00000012048 | Nuclear protein localization 4 homolog (S. cerevisiae). | Transitional endoplasmic reticulum ATPase; Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. Also involved in DNA damage response: recruited to double-strand [...] | 0.997 |
nploc4 | yod1 | ENSDARP00000133068 | ENSDARP00000003565 | Nuclear protein localization 4 homolog (S. cerevisiae). | Ubiquitin thioesterase OTU1; Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of 'Lys-27'-, 'Lys-29'- and 'Lys-33'-linked polyubiquitin chains. A [...] | 0.918 |
nsfl1c | faap100 | ENSDARP00000155350 | ENSDARP00000127337 | NSFL1 (p97) cofactor (p47). | Si:dkey-57h18.1. | 0.713 |
nsfl1c | nploc4 | ENSDARP00000155350 | ENSDARP00000133068 | NSFL1 (p97) cofactor (p47). | Nuclear protein localization 4 homolog (S. cerevisiae). | 0.886 |
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