STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rundc3bRUN domain-containing protein 3B; Belongs to the RUNDC3 family. (450 aa)    
Predicted Functional Partners:
slc25a40
Solute carrier family 25 member 40.
      
 0.977
dmtf1
Cyclin-D-binding Myb-like transcription factor 1; Transcriptional activator which activates the CDKN2A/ARF locus in response to Ras-Raf signaling, thereby promoting p53/TP53- dependent growth arrest. Binds to the consensus sequence 5'- CCCG[GT]ATGT-3'.
      
 0.898
crot
Carnitine O-octanoyltransferase; Belongs to the carnitine/choline acetyltransferase family.
      
 0.857
abcb4
ATP-binding cassette, sub-family B (MDR/TAP), member 4.
   
  
 0.838
adam22
ADAM metallopeptidase domain 22.
      
 0.679
dbf4
DBF4 zinc finger.
 
    
 0.666
abcb5
ATP-binding cassette, sub-family B (MDR/TAP), member 5.
   
  
 0.504
uvrag
UV radiation resistance-associated gene.
    
 
 0.452
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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