STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zgc:101559Zgc:101559. (233 aa)    
Predicted Functional Partners:
atg16l2
ATG16 autophagy-related 16-like 2 (S. cerevisiae).
    
 0.954
atg16l1
ATG16 autophagy-related 16-like 1 (S. cerevisiae).
    
 0.954
rab33ba
RAB33B, member RAS oncogene family a.
  
  
 
0.902
LOC100535428
NACHT domain-containing protein.
   
 
 0.586
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 
 0.585
trappc8
Trafficking protein particle complex 8.
    
 
 0.585
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 
 0.584
trappc5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 
 0.582
trappc2
Trafficking protein particle complex subunit 2; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 
 0.581
rabif
RAB-interacting factor.
    
 
 0.566
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.