Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tor4aaTorsin-4A. (425 aa)    
Predicted Functional Partners:
ahsg2
Alpha-2-HS-glycoprotein 2.
    
 0.793
ptpn23b
Protein tyrosine phosphatase, non-receptor type 23, b.
      
 0.684
sumf1
Sulfatase-modifying factor 1.
      
 0.638
tmem59l
Transmembrane protein 59-like.
      
 0.619
ighv4-5-2
Immunoglobulin heavy variable 4-5.
      
 0.594
aldoaa
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
     
 0.569
naglu
N-acetylglucosaminidase, alpha.
   
 
 0.536
serpinf2b
Alpha-2-antiplasmin; Belongs to the serpin family.
     
 0.511
ctsf
Cathepsin F; Belongs to the peptidase C1 family.
      
 0.489
serping1
Serpin peptidase inhibitor, clade G (C1 inhibitor), member 1; Belongs to the serpin family.
      
 0.479
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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