STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptp4a2bProtein tyrosine phosphatase type IVA, member 2. (168 aa)    
Predicted Functional Partners:
dpp7
Dipeptidyl-peptidase 7.
      
 0.630
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.575
arl15a
ADP-ribosylation factor-like 15a.
   
 
 0.562
LOC100150651
Cyclin and CBS domain divalent metal cation transport mediator 4b.
    
 
 0.557
cnnm3
Uncharacterized protein.
    
 
 0.557
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
      
 0.550
polr2b
Polymerase (RNA) II (DNA directed) polypeptide B; Belongs to the RNA polymerase beta chain family.
   
  
 0.544
im:7138144
LPS-responsive vesicle-trafficking, beach and anchor-containing.
      
 0.544
ppm1g
Protein phosphatase, Mg2+/Mn2+-dependent, 1G.
   
  
 0.542
clns1a
Chloride channel, nucleotide-sensitive, 1A.
      
 0.516
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.