Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cxcr5Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family. (378 aa)    
Predicted Functional Partners:
cxcl12a
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.966
ccl19b
Chemokine (C-C motif) ligand 19b.
    
 0.959
cxcl14
Chemokine (C-X-C motif) ligand 14.
     
 0.957
ccl39.7
Chemokine (C-C motif) ligand 39, duplicate 7.
    
 0.927
ccl25a
Chemokine (C-C motif) ligand 25a.
    
 0.927
ccl19a.2
Chemokine (C-C motif) ligand 19a, tandem duplicate 2.
   
 0.926
cxcl12b
Chemokine (C-X-C motif) ligand 12B (Stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.919
cxcl8a
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.917
cxcl11.5
Chemokine (C-X-C motif) ligand 11, duplicate 5.
    
 0.910
ccl19a.1
C-C motif chemokine.
    
 0.902
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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