Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| alyref | ddx6 | ENSDARP00000139993 | ENSDARP00000149027 | Aly/REF export factor. | DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. | 0.528 |
| alyref | ddx61 | ENSDARP00000139993 | ENSDARP00000129311 | Aly/REF export factor. | DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. | 0.435 |
| alyref | hnrnpub | ENSDARP00000139993 | ENSDARP00000112099 | Aly/REF export factor. | Heterogeneous nuclear ribonucleoprotein Ub. | 0.445 |
| alyref | nsun2 | ENSDARP00000139993 | ENSDARP00000118997 | Aly/REF export factor. | NOP2/Sun RNA methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.908 |
| alyref | pabpc1a | ENSDARP00000139993 | ENSDARP00000021064 | Aly/REF export factor. | Polyadenylate-binding protein 1A; Binds the poly(A) tail of mRNA (By similarity). Prevents mRNA deadenylation and confers poly(A) stability (By similarity). Stimulates the translation of mRNAs to which it is bound, acting, at least in part, with dazl (By similarity). Involved in the maternal-to-zygotic transition in early embryo via interaction with ybx1: interaction recruits pabpc1a on C5-methylcytosine (m5C)-containing maternal mRNAs, preventing their degradation. Belongs to the polyadenylate-binding protein type-1 family. | 0.480 |
| alyref | snrnp35 | ENSDARP00000139993 | ENSDARP00000135151 | Aly/REF export factor. | U11/U12 small nuclear ribonucleoprotein 35 kDa protein. | 0.515 |
| alyref | ybx1 | ENSDARP00000139993 | ENSDARP00000010482 | Aly/REF export factor. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing and transcription regulation. Binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting pabpc1a, thereby preventing mRNA decay. Plays a role in the maternal-to-zygotic transition in early embryo by binding to m5C-containing maternal mRNAs and preventing their degradation. Also [...] | 0.841 |
| ddx6 | alyref | ENSDARP00000149027 | ENSDARP00000139993 | DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. | Aly/REF export factor. | 0.528 |
| ddx6 | ddx61 | ENSDARP00000149027 | ENSDARP00000129311 | DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. | DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. | 0.902 |
| ddx6 | pabpc1a | ENSDARP00000149027 | ENSDARP00000021064 | DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. | Polyadenylate-binding protein 1A; Binds the poly(A) tail of mRNA (By similarity). Prevents mRNA deadenylation and confers poly(A) stability (By similarity). Stimulates the translation of mRNAs to which it is bound, acting, at least in part, with dazl (By similarity). Involved in the maternal-to-zygotic transition in early embryo via interaction with ybx1: interaction recruits pabpc1a on C5-methylcytosine (m5C)-containing maternal mRNAs, preventing their degradation. Belongs to the polyadenylate-binding protein type-1 family. | 0.603 |
| ddx6 | ybx1 | ENSDARP00000149027 | ENSDARP00000010482 | DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing and transcription regulation. Binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting pabpc1a, thereby preventing mRNA decay. Plays a role in the maternal-to-zygotic transition in early embryo by binding to m5C-containing maternal mRNAs and preventing their degradation. Also [...] | 0.807 |
| ddx61 | alyref | ENSDARP00000129311 | ENSDARP00000139993 | DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. | Aly/REF export factor. | 0.435 |
| ddx61 | ddx6 | ENSDARP00000129311 | ENSDARP00000149027 | DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. | DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. | 0.902 |
| ddx61 | pabpc1a | ENSDARP00000129311 | ENSDARP00000021064 | DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. | Polyadenylate-binding protein 1A; Binds the poly(A) tail of mRNA (By similarity). Prevents mRNA deadenylation and confers poly(A) stability (By similarity). Stimulates the translation of mRNAs to which it is bound, acting, at least in part, with dazl (By similarity). Involved in the maternal-to-zygotic transition in early embryo via interaction with ybx1: interaction recruits pabpc1a on C5-methylcytosine (m5C)-containing maternal mRNAs, preventing their degradation. Belongs to the polyadenylate-binding protein type-1 family. | 0.411 |
| ddx61 | ybx1 | ENSDARP00000129311 | ENSDARP00000010482 | DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing and transcription regulation. Binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting pabpc1a, thereby preventing mRNA decay. Plays a role in the maternal-to-zygotic transition in early embryo by binding to m5C-containing maternal mRNAs and preventing their degradation. Also [...] | 0.780 |
| hnrnpub | alyref | ENSDARP00000112099 | ENSDARP00000139993 | Heterogeneous nuclear ribonucleoprotein Ub. | Aly/REF export factor. | 0.445 |
| hnrnpub | ybx1 | ENSDARP00000112099 | ENSDARP00000010482 | Heterogeneous nuclear ribonucleoprotein Ub. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing and transcription regulation. Binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting pabpc1a, thereby preventing mRNA decay. Plays a role in the maternal-to-zygotic transition in early embryo by binding to m5C-containing maternal mRNAs and preventing their degradation. Also [...] | 0.824 |
| nsun2 | alyref | ENSDARP00000118997 | ENSDARP00000139993 | NOP2/Sun RNA methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Aly/REF export factor. | 0.908 |
| nsun2 | pabpc1a | ENSDARP00000118997 | ENSDARP00000021064 | NOP2/Sun RNA methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Polyadenylate-binding protein 1A; Binds the poly(A) tail of mRNA (By similarity). Prevents mRNA deadenylation and confers poly(A) stability (By similarity). Stimulates the translation of mRNAs to which it is bound, acting, at least in part, with dazl (By similarity). Involved in the maternal-to-zygotic transition in early embryo via interaction with ybx1: interaction recruits pabpc1a on C5-methylcytosine (m5C)-containing maternal mRNAs, preventing their degradation. Belongs to the polyadenylate-binding protein type-1 family. | 0.572 |
| nsun2 | ybx1 | ENSDARP00000118997 | ENSDARP00000010482 | NOP2/Sun RNA methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Y-box-binding protein 1; DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing and transcription regulation. Binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C). Promotes mRNA stabilization: acts by binding to m5C- containing mRNAs and recruiting pabpc1a, thereby preventing mRNA decay. Plays a role in the maternal-to-zygotic transition in early embryo by binding to m5C-containing maternal mRNAs and preventing their degradation. Also [...] | 0.854 |
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