Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
M9MM93_DANRESi:ch73-211l2.3. (234 aa)    
Predicted Functional Partners:
ENSDARP00000143185
Si:ch73-158p21.3.
  
  0.976
dZ48C11.3-001
Novel protein similar to MHC class II alpha chain.
  
 
 
0.971
ENSDARP00000151819
Ig-like domain-containing protein.
  
 
 
0.971
mhc2bl
MHC class II beta chain-like.
  
 
0.964
ENSDARP00000137499
Si:dkey-33b17.3.
  
 
0.963
mhc2b
Major histocompatibility complex class II integral membrane beta chain gene.
 
 
0.962
cd4-1
CD4-1 molecule.
  
 0.956
ENSDARP00000140023
Si:zfos-2070c2.3.
 
 
0.954
zgc:103700
Zgc:103700.
  
 
0.954
polh
Polymerase (DNA directed), eta.
      
 0.952
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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