Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psmd10Proteasome 26S subunit, non-ATPase, 10. (226 aa)    
Predicted Functional Partners:
psmd13
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.
   
 0.995
psmd12
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12.
   
 0.995
psmc3
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
   
 0.994
psmc4
Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.
   
 0.994
psmc6
Proteasome (Prosome, macropain) 26S subunit, ATPase, 6; Belongs to the AAA ATPase family.
   
 0.994
psmc2
Proteasome (Prosome, macropain) 26S subunit, ATPase 2; Belongs to the AAA ATPase family.
   
 0.993
psmc5
Proteasome (Prosome, macropain) 26S subunit, ATPase, 5; Belongs to the AAA ATPase family.
   
 0.993
psmd7
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog).
   
 0.993
psmd8
Proteasome 26S subunit, non-ATPase 8.
   
 0.992
psmd3
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 3.
   
 0.991
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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