STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arih2RBR-type E3 ubiquitin transferase. (492 aa)    
Predicted Functional Partners:
cul5a
Cullin 5a; Belongs to the cullin family.
    
 
 0.963
cul5b
Cullin 5b; Belongs to the cullin family.
    
 
 0.933
rnf7
Ring finger protein 7.
    
 
 0.810
A8BAA2_DANRE
Si:ch211-202c21.7.
    
 
 0.810
ube2l3a
Ubiquitin-conjugating enzyme E2L 3a; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.809
lrrcc1
Leucine-rich repeat and coiled-coil centrosomal protein 1.
    
 
 0.751
fbxo41
F-box protein 41.
      
 0.743
nedd8
NEDD8 ubiquitin-like modifier.
   
 
 0.726
nedd8l
NEDD8 ubiquitin-like modifier, like.
   
 
 0.726
tmem183a
Transmembrane protein 183A.
      
 0.716
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.