Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
slc25a40Solute carrier family 25 member 40. (353 aa)    
Predicted Functional Partners:
rundc3b
RUN domain-containing protein 3B; Belongs to the RUNDC3 family.
      
 0.959
crot
Carnitine O-octanoyltransferase; Belongs to the carnitine/choline acetyltransferase family.
      
 0.793
dmtf1
Cyclin-D-binding Myb-like transcription factor 1; Transcriptional activator which activates the CDKN2A/ARF locus in response to Ras-Raf signaling, thereby promoting p53/TP53- dependent growth arrest. Binds to the consensus sequence 5'- CCCG[GT]ATGT-3'.
      
 0.719
slc3a2b
Solute carrier family 3 member 2b.
      
 0.662
abcb4
ATP-binding cassette, sub-family B (MDR/TAP), member 4.
      
 0.661
cmc1
COX assembly mitochondrial protein.
      
 0.661
ier3ip1
Immediate early response 3-interacting protein 1; May be involved in protein transport between endoplasmic reticulum and Golgi apparatus; Belongs to the YOS1 family.
      
 0.589
slc8a4b
Solute carrier family 8 member 4b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
      
 0.577
slc8a1b
Solute carrier family 8 member 1b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
      
 0.560
abcb5
ATP-binding cassette, sub-family B (MDR/TAP), member 5.
      
 0.558
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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