Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
parvbParvin, beta. (365 aa)    
Predicted Functional Partners:
ilk
Integrin-linked kinase.
   
 0.999
pxnb
Paxillin; Cytoskeletal protein involved in actin-membrane attachment at sites of cell adhesion to the extracellular matrix (focal adhesion). Belongs to the paxillin family.
   
 0.977
pxna
Paxillin; Cytoskeletal protein involved in actin-membrane attachment at sites of cell adhesion to the extracellular matrix (focal adhesion). Belongs to the paxillin family.
   
 0.977
itgb4
Integrin beta.
    
 0.959
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.959
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.959
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.958
parvg
Zgc:162304 protein.
  
  
0.951
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
    
 0.948
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
    
 0.948
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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