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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plod2Procollagen lysine 2-oxoglutarate 5-dioxygenase 2b isoform. (754 aa)    
Predicted Functional Partners:
colgalt1-2
Procollagen galactosyltransferase 1; Beta-galactosyltransferase that transfers beta-galactose to hydroxylysine residues of type I collagen. By acting on collagen glycosylation, facilitates the formation of collagen triple helix.
   
0.940
colgalt2
Novel protein similar to vertebrate glycosyltransferase 25 domain containing 1 (GLT25D1).
   
0.933
cercam
Cerebral endothelial cell adhesion molecule.
   
0.928
A8E7A8_DANRE
Si:ch211-13f8.2.
   
0.928
colgalt1
Procollagen galactosyltransferase 1.
   
0.928
plod1a
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
  
  
0.904
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
  
  
0.903
camkmt
Calmodulin-lysine N-methyltransferase.
     
  0.900
col1a1a
Collagen, type I, alpha 1a.
   
 0.880
col1a2
Collagen, type I, alpha 2.
   
 0.877
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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