STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab34aRAB34, member RAS oncogene family a. (260 aa)    
Predicted Functional Partners:
vps53
VPS53 subunit of GARP complex.
    
 
 0.765
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
   
 
 0.658
vps52
VPS52 subunit of GARP complex.
    
 
 0.634
pnkp
Polynucleotide kinase 3'-phosphatase.
      
 0.608
ablim3
Actin-binding LIM protein family, member 3.
      
 0.605
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 
 0.603
tbc1d5
TBC1 domain family, member 5.
   
 
 0.590
tlnrd1
Talin rod domain-containing 1.
      
 0.587
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 
 0.585
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.577
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.