STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ric8bSynembryn-B; Guanine nucleotide exchange factor (GEF), which can activate some, but not all, G-alpha proteins by exchanging bound GDP for free GTP. (536 aa)    
Predicted Functional Partners:
nudt4b
Nudix (nucleoside diphosphate-linked moiety X)-type motif 4b.
   
  
 0.810
aldh18a1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
      
 0.701
gnal
Guanine nucleotide-binding protein G(olf) subunit alpha.
   
 
 0.662
btbd11b
Ankyrin repeat and BTB/POZ domain-containing protein BTBD11-B.
      
 0.652
gnaq
Guanine nucleotide-binding protein (G protein), q polypeptide.
    
 
 0.638
endouc
Poly(U)-specific endoribonuclease-C; Endoribonuclease that cleaves single-stranded RNAs at uridylates and releases products that have 2'-3'-cyclic phosphate termini; Belongs to the ENDOU family.
      
 0.628
gng13a
Similar to Guanine nucleotide binding protein (G protein), gamma 13.
    
 
 0.609
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
      
 0.586
gna11b
Guanine nucleotide-binding protein (G protein), alpha 11b (Gq class).
    
 
 0.562
gna14a
Guanine nucleotide-binding protein (G protein), alpha 14a.
    
 
 0.562
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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