STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klhl41bKelch-like protein 41b; Involved in skeletal muscle development and maintenance. (605 aa)    
Predicted Functional Partners:
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.776
cul3b
Cullin 3b; Belongs to the cullin family.
    
 0.756
arhgef12b
Rho guanine nucleotide exchange factor (GEF) 12b.
    
 
 0.746
zgc:113054
Zgc:113054.
    
 
 0.742
mkxb
Mohawk homeobox b.
      
 0.713
bbs1
Bardet-Biedl syndrome 1.
    
 
 0.709
bbs9
Bardet-Biedl syndrome 9.
   
 
 0.703
itm2cb
Integral membrane protein 2Cb.
      
 0.695
trim55b
Tripartite motif-containing 55b.
   
 
 0.695
tgfbrap1
Transforming growth factor-beta receptor-associated protein 1 homolog; Plays a role in the TGF-beta signaling pathway. Belongs to the TRAP1 family.
      
 0.669
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.