Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
klhl41bKelch-like protein 41b; Involved in skeletal muscle development and maintenance. (605 aa)    
Predicted Functional Partners:
bbs1
Bardet-Biedl syndrome 1.
    
 
 0.758
bbs4
Bardet-Biedl syndrome 4.
    
 
 0.744
bbs9
Bardet-Biedl syndrome 9.
   
 
 0.739
arhgef12b
Rho guanine nucleotide exchange factor (GEF) 12b.
    
 
 0.691
zgc:113054
Zgc:113054.
      
 0.688
neb
Nebulin.
   
 
 0.687
smyd1b
SET and MYND domain-containing 1b.
   
  
 0.679
bbs2
Bardet-Biedl syndrome 2 protein homolog; Required for ciliogenesis.
    
 
 0.672
mkxb
Mohawk homeobox b.
      
 0.672
srfb
Serum response factor b.
    
 
 0.666
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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