Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam185aFamily with sequence similarity 185 member A. (377 aa)    
Predicted Functional Partners:
pex13
Peroxisomal biogenesis factor 13.
   
 0.943
pex19
Peroxisomal biogenesis factor 19.
   
 
 0.857
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 
 0.854
pex10
Peroxisomal biogenesis factor 10.
    
 
 0.854
pex7
Peroxisomal biogenesis factor 7.
    
 
 0.854
pex6
Peroxisomal biogenesis factor 6.
    
 
 0.850
pex2
Peroxisomal biogenesis factor 2.
    
 
 0.849
pex1
Peroxisomal biogenesis factor 1.
    
 
 0.844
pex5
Peroxisomal biogenesis factor 5.
   
 0.806
pex5la
Peroxisomal biogenesis factor 5-like a.
   
 0.806
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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