STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
inaaInternexin neuronal intermediate filament protein, alpha a; Belongs to the intermediate filament family. (474 aa)    
Predicted Functional Partners:
ccdc85al
Coiled-coil domain-containing 85A,-like.
      
 0.853
ola1
Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.
      
 0.669
or111-8
Odorant receptor, family D, subfamily 111, member 8.
    
 
 0.592
grapa
GRB2-related adaptor protein a.
    
 
 0.583
or101-1
Odorant receptor, family B, subfamily 101, member 1.
    
 
 0.570
or111-6
Odorant receptor, family D, subfamily 111, member 6.
    
 
 0.555
nr2f1b
Nuclear receptor subfamily 2 group F member 1-B; Putative transcription factor that is required in photoreceptor cells precursors during eye development; Belongs to the nuclear hormone receptor family. NR2 subfamily.
    
 
 0.553
or111-1
Odorant receptor, family D, subfamily 111, member 1.
    
 
 0.482
cplx4b
Complexin 4b.
   
    0.479
cplx4a
Si:ch211-233a1.5.
   
    0.471
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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