Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
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Experiments
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[Homology]
Score
hpcaHippocalcin. (193 aa)    
Predicted Functional Partners:
guf1
Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.
      
 0.679
dgkaa
Diacylglycerol kinase.
   
  
 0.664
tescb
Tescalcin b.
    
 0.648
pi4kb
Phosphatidylinositol 4-kinase beta; Phosphorylates phosphatidylinositol (PI) in the first committed step in the production of the second messenger inositol- 1,4,5,-trisphosphate (PIP).
    
 
 0.623
nt5c1aa
5'-nucleotidase, cytosolic IAa.
    
 0.615
fosl2l
Si:ch211-59d15.4.
    
 
 0.611
neurl1ab
Neuralized E3 ubiquitin protein ligase 1Ab.
      
 0.570
cacng6b
Calcium channel, voltage-dependent, gamma subunit 6b.
      
 0.559
atp1a2a
Sodium/potassium-transporting ATPase subunit alpha.
   
 0.538
slc25a25b
Calcium-binding mitochondrial carrier protein SCaMC-2-B; Calcium-dependent mitochondrial solute carrier. Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
 0.523
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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