STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt5bSynaptotagmin Vb. (446 aa)    
Predicted Functional Partners:
snap25b
Synaptosomal-associated protein 25-B; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family.
   
 
 0.763
slitrk5a
SLIT and NTRK-like family, member 5a.
   
  
 0.748
snap25a
Synaptosomal-associated protein 25-A; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family.
   
 
 0.730
kcnip1b
Kv channel-interacting protein 1 b.
   
  
 0.687
zgc:101731
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
 0.676
grm2a
Glutamate receptor, metabotropic 2a.
   
  
 0.672
rprml
Reprimo-like protein.
   
  
 0.670
ston2
Stonin 2; Belongs to the Stoned B family.
   
 
 0.670
c1ql4b
Complement component 1, q subcomponent-like 4b.
      
 0.662
s100a11
S100 calcium-binding protein A11.
    
 
 0.649
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.