Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
syt5bSynaptotagmin Vb. (446 aa)    
Predicted Functional Partners:
ston2
Stonin 2; Belongs to the Stoned B family.
   
 
 0.816
snap25b
Synaptosomal-associated protein 25-B; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family.
   
 
 0.811
slitrk5a
SLIT and NTRK-like family, member 5a.
   
  
 0.764
snap25a
Synaptosomal-associated protein 25-A; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family.
   
 
 0.763
ugt5d1
UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.
   
  
 0.741
lhfpl3
LHFPL tetraspan subfamily member 3 protein.
   
  
 0.721
vamp3
Vesicle-associated membrane protein 3 (Cellubrevin).
    
 
 0.707
vamp2
Vesicle-associated membrane protein 2.
   
 
 0.703
dpysl5b
Dihydropyrimidinase-like 5b.
   
  
 0.696
kcnip1b
Kv channel-interacting protein 1 b.
   
  
 0.679
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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