STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stxbp1aSyntaxin-binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family. (591 aa)    
Predicted Functional Partners:
snap25a
Synaptosomal-associated protein 25-A; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family.
   
 0.965
stx1a
Syntaxin 1A (brain); Belongs to the syntaxin family.
   
 0.947
stx1b
Syntaxin 1B; Belongs to the syntaxin family.
   
 
 0.944
vamp2
Vesicle-associated membrane protein 2.
   
 0.911
scn1laa
Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
   
  
 0.868
syt1a
Synaptotagmin Ia.
   
 0.839
cplx2l
Complexin 2,-like.
   
 
 0.833
rims1a
Regulating synaptic membrane exocytosis 1a.
     
 0.824
lancl1
Glutathione S-transferase LANCL1; Functions as glutathione transferase. Catalyzes conjugation of the glutathione (GSH) to artificial substrates 1-chloro-2,4- dinitrobenzene (CDNB) and p-nitrophenyl acetate (By similarity). Binds glutathione (By similarity); Belongs to the LanC-like protein family.
      
 0.817
GARNL3
GTPase-activating Rap/Ran-GAP domain-like protein 3; Belongs to the GARNL3 family.
   
  
 0.808
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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