STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl5aNovel protein similar to vertebrate ADP-ribosylation factor-like 8 (ARL8); Belongs to the small GTPase superfamily. Arf family. (179 aa)    
Predicted Functional Partners:
noc3l
Nucleolar complex protein 3 homolog; Belongs to the CBF/MAK21 family.
      
 0.838
scamp1
Secretory carrier-associated membrane protein.
    
 
 0.737
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
   
 
 0.636
copg2
Coatomer subunit gamma-2; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity); Belongs to the COPG family.
   
 
 0.581
itsn2a
Intersectin 2a.
    
 
 0.581
itsn2b
Intersectin 2b.
    
 
 0.581
slc11a2
Solute carrier family 11 member 2.
   
  
 0.555
itsn1
Intersectin 1 (SH3 domain protein).
    
 
 0.551
rybpa
RING1 and YY1-binding protein A; May be implicated in the regulation of the transcription as a repressor of the transcriptional activity of E4TF1.
   
 
 0.546
gbf1
Golgi brefeldin A-resistant guanine nucleotide exchange factor 1.
    
 
 0.545
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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