STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fat1bFAT atypical cadherin 1b. (4503 aa)    
Predicted Functional Partners:
nav1b
Neuron navigator 1b.
      
 0.898
icn2
Protein S100; Belongs to the S-100 family.
      
 0.832
slitrk2
SLIT and NTRK-like family, member 2.
      
 0.802
lamb4
Laminin subunit beta-4; Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
      
 0.742
dcaf8
DDB1 and CUL4-associated factor 8.
      
 0.738
lamb2
Laminin, beta 2 (laminin S).
   
  
 0.643
snx19a
Sorting nexin 19a.
      
 0.629
timp2b
TIMP metallopeptidase inhibitor 2b.
      
 0.613
mpp6b
Membrane protein, palmitoylated 6b (MAGUK p55 subfamily member 6); Belongs to the MAGUK family.
      
 0.559
hepacam
Ig-like domain-containing protein.
      
 0.553
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.