Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fat1bFAT atypical cadherin 1b. (4503 aa)    
Predicted Functional Partners:
nav1b
Neuron navigator 1b.
     
 0.882
fjx1
Four-jointed box kinase 1.
   
  0.845
strc1
Stereocilin 1.
     
 0.742
kifl
Kinesin family-like.
      
 0.739
tnfsf10l3
Tumor necrosis factor (ligand) superfamily, member 10-like 3; Belongs to the tumor necrosis factor family.
      
 0.689
slitrk2
SLIT and NTRK-like family, member 2.
      
 0.687
icn2
Protein S100; Belongs to the S-100 family.
      
 0.670
rereb
Arginine-glutamic acid dipeptide (RE) repeats b.
    
  0.611
rerea
Arginine-glutamic acid dipeptide (RE) repeats a.
    
  0.611
atn1
Atrophin 1.
    
  0.611
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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