Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (468 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
   
 
 0.976
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 
 0.969
abt1
Activator of basal transcription 1.
   
 
 0.960
utp3
UTP3 small subunit processome component.
   
 
 0.935
pwp2h
PWP2 small subunit processome component.
   
 
 0.931
dhx37
DEAH (Asp-Glu-Ala-His) box polypeptide 37.
   
 
 0.920
nol6
Nucleolar protein 6.
   
 
 0.909
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.888
ddx56
DEAD (Asp-Glu-Ala-Asp) box helicase 56.
  
  
0.882
ngdn
Neuroguidin; May inhibit mRNA translation; Belongs to the SAS10 family.
   
 
 0.871
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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