STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
taf5TAF5 RNA polymerase II, TATA box-binding protein (TBP)-associated factor. (756 aa)    
Predicted Functional Partners:
taf12
TAF12 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 0.999
taf7
TAF7 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 0.999
taf6
TAF6 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 0.999
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.998
taf9
TAF9 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 0.998
taf11
TAF11 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 0.998
taf2
Transcription initiation factor TFIID subunit 2; Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter (By similarity).
   
 0.998
taf8
Transcription initiation factor TFIID subunit 8; Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription (By similarity); Belongs to the TAF8 family.
    
 0.996
taf13
TATA-box-binding protein-associated factor 13.
    
 0.995
taf3
TAF3 RNA polymerase II, TATA box-binding protein (TBP)-associated facto.
   
 0.992
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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