Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
papolgPoly(A) polymerase gamma. (744 aa)    
Predicted Functional Partners:
sympk
Symplekin.
   
 0.987
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
 0.963
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.959
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.959
cpsf3
Cleavage and polyadenylation-specific factor 3.
   
 0.956
cpsf1
Cleavage and polyadenylation-specific factor 1.
   
 0.954
papola
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
     
  0.944
pabpn1
Poly(A)-binding protein, nuclear 1.
   
 0.943
cpsf4
Cleavage and polyadenylation-specific factor 4.
    
 0.937
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.935
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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