STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdcbp2Syndecan-binding protein (syntenin) 2. (299 aa)    
Predicted Functional Partners:
cd63
Tetraspanin.
   
 
 0.926
cd9a
Tetraspanin.
   
 
 0.746
cd81a
Tetraspanin.
   
 
 0.706
tsg101a
Tumor susceptibility 101a.
   
  
 0.691
sdc4
Syndecan 4.
   
 
 0.691
zgc:56064
Serine/threonine-protein phosphatase.
   
 
 0.588
nxph2b
Neurexophilin; May be signaling molecules that resemble neuropeptides.
      
 0.569
pdcd6ip
Programmed cell death 6-interacting protein.
   
 
 0.564
pfdn2
Prefoldin subunit 2.
   
  
 0.544
nxph2a
Neurexophilin; May be signaling molecules that resemble neuropeptides.
      
 0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.