STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyp39a1Cytochrome P450, family 39, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family. (464 aa)    
Predicted Functional Partners:
hsd3b7
Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase; Belongs to the 3-beta-HSD family.
   
 0.954
cyp46a1.2
Cytochrome P450, family 46, subfamily A, polypeptide 1, tandem duplicate 2.
 
 
0.932
cyp46a1.4
Cytochrome P450, family 46, subfamily A, polypeptide 1, tandem duplicate 4.
 
 
0.932
cyp46a1.3
Cytochrome P450, family 46, subfamily A, polypeptide 1, tandem duplicate 3; Belongs to the cytochrome P450 family.
 
 
0.926
cyp46a1.1
Cytochrome P450, family 46, subfamily A, polypeptide 1, tandem duplicate 1; Belongs to the cytochrome P450 family.
 
 
0.925
ptrhd1
Peptidyl-tRNA hydrolase domain-containing 1.
      
 0.839
hsd17b7
Hydroxysteroid (17-beta) dehydrogenase 7.
   
 
 0.839
lss
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 0.833
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
  
 
 0.816
sqlea
Squalene epoxidase a.
   
 0.793
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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