Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
gata4 | hand2 | ENSDARP00000135304 | ENSDARP00000022921 | GATA-binding protein 4. | Heart- and neural crest derivatives-expressed protein 2; Essential for myocardial and pectoral fin differentiation, patterning and morphogenesis. | 0.964 |
gata4 | isl1 | ENSDARP00000135304 | ENSDARP00000012903 | GATA-binding protein 4. | Insulin gene enhancer protein isl-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. May be involved in subtype specialization of primary motoneurons. May bind to insulin gene enhancer sequences. Essential for heart development (By similarity). | 0.890 |
gata4 | mef2ca | ENSDARP00000135304 | ENSDARP00000089908 | GATA-binding protein 4. | Myocyte enhancer factor 2ca. | 0.961 |
gata4 | myh6 | ENSDARP00000135304 | ENSDARP00000108536 | GATA-binding protein 4. | Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. | 0.860 |
gata4 | nkx2.5 | ENSDARP00000135304 | ENSDARP00000016308 | GATA-binding protein 4. | NK2 homeobox 5. | 0.999 |
gata4 | nppa | ENSDARP00000135304 | ENSDARP00000108691 | GATA-binding protein 4. | Natriuretic peptide A. | 0.871 |
gata4 | tbx20 | ENSDARP00000135304 | ENSDARP00000026669 | GATA-binding protein 4. | T-box transcription factor TBX20; Transcriptional regulator that may play a very early role in the differentiation of the cardiac precursors. | 0.937 |
gata4 | tbx5a | ENSDARP00000135304 | ENSDARP00000033053 | GATA-binding protein 4. | T-box transcription factor TBX5-A; Required for pectoral fin formation. Together with tbx5b, involved in eye and heart development. Required for the looping stage of heart development. May bind to the core DNA motif of promoters. | 0.998 |
gata5 | gata6 | ENSDARP00000026381 | ENSDARP00000137653 | Transcription factor gata5. | GATA-binding protein 6. | 0.408 |
gata5 | hand2 | ENSDARP00000026381 | ENSDARP00000022921 | Transcription factor gata5. | Heart- and neural crest derivatives-expressed protein 2; Essential for myocardial and pectoral fin differentiation, patterning and morphogenesis. | 0.885 |
gata5 | isl1 | ENSDARP00000026381 | ENSDARP00000012903 | Transcription factor gata5. | Insulin gene enhancer protein isl-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. May be involved in subtype specialization of primary motoneurons. May bind to insulin gene enhancer sequences. Essential for heart development (By similarity). | 0.579 |
gata5 | mef2ca | ENSDARP00000026381 | ENSDARP00000089908 | Transcription factor gata5. | Myocyte enhancer factor 2ca. | 0.508 |
gata5 | myh6 | ENSDARP00000026381 | ENSDARP00000108536 | Transcription factor gata5. | Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. | 0.696 |
gata5 | nkx2.5 | ENSDARP00000026381 | ENSDARP00000016308 | Transcription factor gata5. | NK2 homeobox 5. | 0.964 |
gata5 | nppa | ENSDARP00000026381 | ENSDARP00000108691 | Transcription factor gata5. | Natriuretic peptide A. | 0.535 |
gata5 | tbx20 | ENSDARP00000026381 | ENSDARP00000026669 | Transcription factor gata5. | T-box transcription factor TBX20; Transcriptional regulator that may play a very early role in the differentiation of the cardiac precursors. | 0.798 |
gata5 | tbx5a | ENSDARP00000026381 | ENSDARP00000033053 | Transcription factor gata5. | T-box transcription factor TBX5-A; Required for pectoral fin formation. Together with tbx5b, involved in eye and heart development. Required for the looping stage of heart development. May bind to the core DNA motif of promoters. | 0.782 |
gata6 | gata5 | ENSDARP00000137653 | ENSDARP00000026381 | GATA-binding protein 6. | Transcription factor gata5. | 0.408 |
gata6 | hand2 | ENSDARP00000137653 | ENSDARP00000022921 | GATA-binding protein 6. | Heart- and neural crest derivatives-expressed protein 2; Essential for myocardial and pectoral fin differentiation, patterning and morphogenesis. | 0.883 |
gata6 | isl1 | ENSDARP00000137653 | ENSDARP00000012903 | GATA-binding protein 6. | Insulin gene enhancer protein isl-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. May be involved in subtype specialization of primary motoneurons. May bind to insulin gene enhancer sequences. Essential for heart development (By similarity). | 0.732 |
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