STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capn9Calpain 9; Belongs to the peptidase C2 family. (688 aa)    
Predicted Functional Partners:
cast
Calpastatin.
   
 
 0.729
capns1b
Calpain, small subunit 1 b.
   
0.720
capns1a
Calpain, small subunit 1 a.
   
0.716
cavin2b
Caveolae-associated protein 2b.
   
  
 0.695
cyt1l
Type I cytokeratin, enveloping layer,-like; Belongs to the intermediate filament family.
   
 
 0.583
cyt1
Type I cytokeratin, enveloping layer; Belongs to the intermediate filament family.
   
 
 0.582
capn15
Calpain 15; Belongs to the peptidase C2 family.
     
0.541
capn5b
Calpain 5b; Belongs to the peptidase C2 family.
  
0.524
krt92
Keratin 92; Belongs to the intermediate filament family.
   
 
 0.510
capn10
Calpain 10; Belongs to the peptidase C2 family.
    
0.506
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.