Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
capn9Calpain 9; Belongs to the peptidase C2 family. (688 aa)    
Predicted Functional Partners:
cast
Calpastatin.
   
 0.841
capns1a
Calpain, small subunit 1 a.
   
0.757
ccdc171
Coiled-coil domain-containing 171.
      
 0.720
cavin2b
Caveolae-associated protein 2b.
   
  
 0.703
capn15
Calpain 15; Belongs to the peptidase C2 family.
     
0.618
tceanc2
Transcription elongation factor A N-terminal and central domain-containing protein 2.
      
 0.596
capn5a
Calpain 5a; Belongs to the peptidase C2 family.
  
 
0.585
purg
Purine-rich element-binding protein G.
      
 0.560
capn10
Calpain 10; Belongs to the peptidase C2 family.
    
0.515
capns1b
Calpain, small subunit 1 b.
   
  0.512
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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