Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
COX5BZgc:86599. (126 aa)    
Predicted Functional Partners:
cox5aa
Cytochrome c oxidase subunit 5Aa.
   
 0.998
cox7c
Cytochrome c oxidase, subunit VIIc.
   
 0.998
cox5ab
Cytochrome c oxidase subunit 5Ab.
   
 0.998
cox6c
Cytochrome c oxidase subunit 6C.
   
 0.997
uqcrq
Ubiquinol-cytochrome c reductase, complex III subunit VII.
   
 0.996
cox6a1
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 0.995
cox7b
Cytochrome c oxidase subunit 7B.
   
 0.995
uqcr10
Ubiquinol-cytochrome c reductase, complex III subunit X.
   
 0.994
cox6b1
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
   
 0.993
cox4i1
Cytochrome c oxidase subunit IV isoform 1.
   
 0.992
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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