rbfox1l protein (Danio rerio) - STRING interaction network

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[Homology]

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rbfox1l

RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons. (382 aa)

Predicted Functional Partners:

rbm24a

0.837

snrpc

0.738

rbpms

0.733

rbm24b

0.703

rbpms2b

0.699

elavl1b

0.684

rbfox3a

0.663

elavl1a

0.655

nrcama

0.638

cntn1b

0.638

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cntn1b	nrcama	ENSDARP00000116014	ENSDARP00000112170	Contactin 1b.	Neuronal cell adhesion molecule a.	0.965
cntn1b	rbfox1l	ENSDARP00000116014	ENSDARP00000016637	Contactin 1b.	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	0.638
elavl1a	rbfox1l	ENSDARP00000120506	ENSDARP00000016637	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	0.655
elavl1a	rbfox3a	ENSDARP00000120506	ENSDARP00000144068	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	0.517
elavl1a	rbm24a	ENSDARP00000120506	ENSDARP00000135480	ELAV-like protein; Belongs to the RRM elav family.	RNA-binding protein 24; Multifunctional RNA-binding protein involved in the regulation of pre-mRNA splicing, mRNA stability and mRNA translation important for cell fate decision and differentiation. Plays a major role in pre-mRNA alternative splicing regulation. Mediates preferentially muscle-specific exon inclusion in numerous mRNAs important for striated cardiac and skeletal muscle cell differentiation. Binds to intronic splicing enhancer (ISE) composed of stretches of GU-rich motifs localized in flanking intron of exon that will be included by alternative splicing. Involved in embry [...]	0.570
elavl1a	rbm24b	ENSDARP00000120506	ENSDARP00000127596	ELAV-like protein; Belongs to the RRM elav family.	RNA-binding motif protein 24b.	0.607
elavl1a	rbpms2b	ENSDARP00000120506	ENSDARP00000026087	ELAV-like protein; Belongs to the RRM elav family.	RNA-binding protein, mRNA-processing factor 2b.	0.478
elavl1b	rbfox1l	ENSDARP00000157323	ENSDARP00000016637	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	0.684
elavl1b	rbfox3a	ENSDARP00000157323	ENSDARP00000144068	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	0.599
nrcama	cntn1b	ENSDARP00000112170	ENSDARP00000116014	Neuronal cell adhesion molecule a.	Contactin 1b.	0.965
nrcama	rbfox1l	ENSDARP00000112170	ENSDARP00000016637	Neuronal cell adhesion molecule a.	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	0.638
rbfox1l	cntn1b	ENSDARP00000016637	ENSDARP00000116014	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	Contactin 1b.	0.638
rbfox1l	elavl1a	ENSDARP00000016637	ENSDARP00000120506	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	ELAV-like protein; Belongs to the RRM elav family.	0.655
rbfox1l	elavl1b	ENSDARP00000016637	ENSDARP00000157323	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	ELAV-like protein; Belongs to the RRM elav family.	0.684
rbfox1l	nrcama	ENSDARP00000016637	ENSDARP00000112170	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	Neuronal cell adhesion molecule a.	0.638
rbfox1l	rbfox3a	ENSDARP00000016637	ENSDARP00000144068	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	0.663
rbfox1l	rbm24a	ENSDARP00000016637	ENSDARP00000135480	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	RNA-binding protein 24; Multifunctional RNA-binding protein involved in the regulation of pre-mRNA splicing, mRNA stability and mRNA translation important for cell fate decision and differentiation. Plays a major role in pre-mRNA alternative splicing regulation. Mediates preferentially muscle-specific exon inclusion in numerous mRNAs important for striated cardiac and skeletal muscle cell differentiation. Binds to intronic splicing enhancer (ISE) composed of stretches of GU-rich motifs localized in flanking intron of exon that will be included by alternative splicing. Involved in embry [...]	0.837
rbfox1l	rbm24b	ENSDARP00000016637	ENSDARP00000127596	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	RNA-binding motif protein 24b.	0.703
rbfox1l	rbpms	ENSDARP00000016637	ENSDARP00000140207	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	RNA-binding protein, mRNA-processing factor.	0.733
rbfox1l	rbpms2b	ENSDARP00000016637	ENSDARP00000026087	RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.	RNA-binding protein, mRNA-processing factor 2b.	0.699

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