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STRINGSTRING
lrrc40 protein (Danio rerio) - STRING interaction network
"lrrc40" - Leucine-rich repeat-containing protein 40 in Danio rerio
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc40Leucine-rich repeat-containing protein 40; Leucine rich repeat containing 40 (601 aa)    
Predicted Functional Partners:
tnrc5
Protein canopy homolog 3; Toll-like receptor (TLR)-specific co-chaperone for HSP90B1. Required for proper TLR folding and hence controls TLR exit from the endoplasmic reticulum. Consequently, required for immune responses (By similarity) (276 aa)
     
 
  0.955
cnpy4
Canopy4; Belongs to the canopy family (217 aa)
       
 
  0.901
cdc5l
CDC5 cell division cycle 5-like (S. pombe) (801 aa)
     
      0.899
kctd3
Potassium channel tetramerisation domain containing 3 (821 aa)
     
      0.862
mri1
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P); Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily (353 aa)
       
      0.859
gal3st1
galactose-3-O-sulfotransferase 1 (425 aa)
       
 
  0.854
glrx3
Glutaredoxin 3; Together with bola2, acts as a cytosolic iron-sulfur (Fe-S) cluster assembly factor that facilitates [2Fe-2S] cluster insertion into a subset of cytosolic proteins (By similarity). Required for hemoglobin maturation. Does not possess any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity (By similarity) (326 aa)
           
  0.843
RPL37A
Ribosomal protein L37a (92 aa)
       
 
  0.688
pon2
Paraoxonase 2 (355 aa)
       
 
  0.687
SHKBP1
SH3KBP1 binding protein 1 (841 aa)
     
      0.667
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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