STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabgef1RAB guanine nucleotide exchange factor (GEF) 1. (502 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase-binding effector protein 1.
   
 0.999
rabep2
Rabaptin, RAB GTPase-binding effector protein 2.
   
 
 0.996
rab21
RAB21, member RAS oncogene family.
   
 
 0.996
rab5b
RAB5B, member RAS oncogene family.
   
 0.942
rab5aa
RAB5A, member RAS oncogene family, a.
   
 0.942
rab5c
RAB5C, member RAS oncogene family.
   
 0.942
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 
 0.922
rab5ab
RAB5A, member RAS oncogene family like.
   
 
 0.896
rab22a
RAB22A, member RAS oncogene family.
   
 
 0.889
rab24
RAB24, member RAS oncogene family.
   
 
 0.889
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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