Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nup50Nucleoporin 50. (422 aa)    
Predicted Functional Partners:
nup153
Nucleoporin 153.
   
 
 0.993
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 
 0.990
kpnb1
Karyopherin (importin) beta 1.
   
 
 0.984
brd7
Bromodomain-containing 7.
   
 
 0.977
nup214
Nucleoporin 214.
   
 
 0.976
nup133
Nuclear pore complex protein Nup133; Involved in poly(A)+ RNA transport (By similarity). Involved in nephrogenesis.
   
 
 0.971
arid2
AT-rich interactive domain 2 (ARID, RFX-like).
   
   0.968
smarcd2
SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily d, member 2.
   
   0.967
nup43
Nucleoporin 43.
   
 
 0.950
nup160
Nucleoporin 160.
    
 
 0.949
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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