STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dffbDNA fragmentation factor, beta polypeptide (caspase-activated DNase). (333 aa)    
Predicted Functional Partners:
dffa
DNA fragmentation factor, alpha polypeptide.
     
  0.900
casp3a
Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.824
kat5b
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
      
 0.742
h1-0
H1 histone family, member 0.
   
 0.738
cidea
Cell death-inducing DFFA-like effector a.
    
 
0.670
csf2rb
Colony-stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage).
      
 0.662
cidec
Cell death-inducing DFFA-like effector c.
    
 
 0.600
tnfsf12
Tumor necrosis factor superfamily member 12; Belongs to the tumor necrosis factor family.
      
 0.585
api5
Apoptosis inhibitor 5.
   
  
 0.575
dad1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]
      
 0.555
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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