Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
col14a1aCollagen, type XIV, alpha 1a. (1864 aa)    
Predicted Functional Partners:
col6a1
Collagen, type VI, alpha 1.
  
0.621
col6a2
Collagen, type VI, alpha 2.
  
 
0.605
phykpl
5-phosphohydroxy-L-lysine phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
      
 0.561
zgc:64106
Zgc:64106.
    
 0.492
arhgef12a
Rho guanine nucleotide exchange factor (GEF) 12a.
      
 0.489
FAM180A
Uncharacterized protein.
      
 0.489
selenow2b
Selenoprotein W, 2b.
    
 
 0.466
znrf2a
Zinc and ring finger 2a.
      
 0.464
slc35c2
Solute carrier family 35 member C2.
 
      0.448
igdcc3
Immunoglobulin superfamily, DCC subclass, member 3.
      
 0.447
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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