STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bgnaBiglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (369 aa)    
Predicted Functional Partners:
hspg2
Heparan sulfate proteoglycan 2.
   
 
 0.716
col6a2
Collagen, type VI, alpha 2.
   
 
 0.691
postnb
Periostin, osteoblast-specific factor b.
   
  
 0.687
col6a1
Collagen, type VI, alpha 1.
   
 
 0.667
fmodb
Fibromodulin b.
  
  
0.666
fmoda
Fibromodulin a.
  
  
0.632
zgc:77287
Zgc:77287.
  
   
 0.627
postna
Periostin, osteoblast-specific factor a.
   
  
 0.618
tnmd
Tenomodulin.
   
  
 0.614
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
   
  
 0.610
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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