STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rom1aRetinal outer segment membrane protein 1a. (346 aa)    
Predicted Functional Partners:
rom1b
Retinal outer segment membrane protein 1b.
  
  
0.874
glyr1
Putative oxidoreductase GLYR1; May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling; Belongs to the HIBADH-related family. NP60 subfamily.
      
 0.694
pde6gb
Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.
   
  
 0.635
pdca
Phosducin a.
   
  
 0.595
rab18a
RAB18A, member RAS oncogene family.
      
 0.589
arr3a
Arrestin 3, retinal (X-arrestin), like.
   
  
 0.580
tecrb
Trans-2,3-enoyl-CoA reductase b.
      
 0.569
pnpla8
Patatin-like phospholipase domain-containing 8.
   
  
 0.565
tbx2a
T-box transcription factor 2a.
   
  
 0.561
nr2f1b
Nuclear receptor subfamily 2 group F member 1-B; Putative transcription factor that is required in photoreceptor cells precursors during eye development; Belongs to the nuclear hormone receptor family. NR2 subfamily.
      
 0.552
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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