Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmod2Tropomodulin 2. (344 aa)    
Predicted Functional Partners:
tmod4
Tropomodulin 4 (Muscle).
  
  
0.974
tmod1
Tropomodulin 1.
     
  0.950
rbm18
Probable RNA-binding protein 18.
    
   0.883
neb
Nebulin.
   
 
 0.868
tpm2
Tropomyosin 2 (beta); Belongs to the tropomyosin family.
   
 0.863
actn3b
Actinin alpha 3b.
     
 0.839
acta1b
Actin alpha 1, skeletal muscle b.
    
 
 0.743
tnnt1
Troponin T type 1 (skeletal, slow).
     
 0.724
gsnb
Gelsolin b.
    
 
 0.701
tcap
Titin-cap (telethonin).
   
 
 0.700
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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